1) you can use the instrument software to convert to csv, text or other ASCII format.
2) Use Spekwin
3) If you have MATLAB for your data analysis, you can use this submission-http://www.mathworks.com/matlabcentral/fileexchange/22736-perkinelmer-ir-data-file-import-tools
For future measurements-
1. Change the default output format to something you can manage
2. If you have OriginPro, always use JCAMP-DX as your default output format; you can then import all the files in a single go.