Hi all. I have a pdb file which contains protein with membrane and water box. I'm trying to add oxygen molecules to the water phase. I think I should randomly substitute a number of water molecules with O2. Could anyone help me with that?
You can make an oxygen molecule and then open your system in the pymol and manually add it to the system.
Aashish Bhatt Thank you so much for your help. I will try it.
we are planning to use UAE for sea urchin gonads, however, we don't know how many gonads will we need to achieve our targeted amount of extract. what is the usual yield of UAE?
09 April 2024 4,826 0 View
We are planning to use ultrasonic-assisted extraction for sea urchins using ethanol as a solvent.
08 March 2024 8,719 1 View
We are going to conduct a study on the antidiabetic activity of sea urchin extracts and it was suggested that we use cell lines to determine the activity of our extract. Are there any laboratories...
25 February 2024 8,747 1 View
Unsure if there is a difference in ultrasound assisted and ultrasonic assisted extraction
18 February 2024 9,755 1 View
We will be conducting an enzymatic assay using a-glucosidase and a-amylase using acarbose as the positive control. What should be our negative control?
15 February 2024 1,474 2 View
We are using 5 different test concentrations of sea urchin ethanolic extracts, and we would like to prepare it using a stock solution of our crude extract with a known concentration. What diluting...
15 February 2024 3,950 0 View
Winter's Basic Clinical Pharmacokinetics, 7th Edition
04 December 2023 666 0 View
I saw it in the laboratory and it was like Serratia marcescens, but I was sure it is Moraxella.
26 November 2023 5,609 0 View
Is the software and designing rules different from primer design for PCR?
26 November 2023 6,642 3 View
The actual copy of the questionnaire is available online and provided by the original author of the tool, but we also need an interpretation table to determine what range of scores will determine...
06 June 2023 4,329 0 View
The paper in question is "Interpolation of Nitrogen Fertilizer Use in Canada from Fertilizer Use Surveys". This paper was very recently published by Agronomy (MDPI). Agronomy has, in the last day...
07 August 2024 9,934 3 View
Program: g_mmpbsa, version 2024.1 Source file: extrn_apbs.cxx (line 152) Fatal error: Failed to execute command: $APBS pybYcUWA.in --output-file=pybYcUW.out
07 August 2024 6,066 0 View
The first pdf file I uploaded had an error. So I uploaded an updated, corrected pdf of that paper with a different pdf name. I dpon't want the old copy to be download or read.
07 August 2024 9,508 1 View
Dear QE-users, In the method where full MS positive mode and PRM mode are used, we always get an incorrect auxiliary gas reading (41 instead of 25). This only happens in this method; other...
06 August 2024 4,953 0 View
Greetings When one is to perform Simulation or modelling of Pyrolysis of Biomass Waste materials using Aspen Plus software, and one has both the macromolecules breakdown (Cellulose, Lignin and...
06 August 2024 5,023 1 View
I have protein-membrane simulations (PDB, PSF, DCD) and have noticed that water molecules near the protein are not visible in the simulations. How can I fix this issue? Is there a way to place the...
04 August 2024 1,200 2 View
Hello. I am working on ROS production of two systems: system A is cerium oxide and hydrogen peroxide, system B is cerium oxide nanoparticle, hydrogen peroxide and potassium bromide. I did some...
04 August 2024 5,974 3 View
Dear Researchers Kindly share JCPDS 65-7246 file Thanks in advance
04 August 2024 5,613 1 View
Hi everyone I need a file with a dirty and clean potato image
04 August 2024 7,199 4 View
Why BaO (s) + H2O(l) ---> Ba 2+(aq) + 2 OH - (aq) if Oxygen loves owning all the electrons, why would it bind to hydrogen which competes with Oxygen for electron ownership more so than...
03 August 2024 5,392 1 View