I am writing to seek assistance with an issue I have encountered while using AmberTools23 on my Ubuntu 23.04 system. Specifically, I am experiencing problems with the 'nab' command, which does not seem to work as expected.
Here are the steps I followed for installation:
conda create --name AmberTools23
conda activate AmberTools23
conda install -c conda-forge ambertools=23
After successfully activating the environment, I try to use 'nab'. The system reports that the 'nab' command is not found, and when I run 'which nab', it does not produce any output. Both 'tleap' and 'antechamber' work.
My objective is to use 'nab' to construct different shapes of DNA, and I would greatly appreciate any guidance or assistance you can provide to resolve this issue .
Best regards,
NAB is no longer a part of AmberTools. Besides attempting to download an older version of AmberTools, what other options do I have to build and modify DNA structures to ensure compatibility with Amber?
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