I used "draw delete all" command to delete the pbc box in VMD, but it's just removed from the current frame. How can I remove it from all frames?
did you use trjconv command? with a -nopbc flag, it should work.
http://manual.gromacs.org/documentation/2018/onlinehelp/gmx-trjconv.html
Removing the box information would be:
pbc set {0 0 0} -all
But I guess you just want to deactivate the display of the box, so this is:
pbc box -off
Maybe pbc box -color black
Save your visualization state as vmd file. Then, open the file using text editor, delete the box section.
For example:
graphics top line {0.000000 0.000000 0.000000} {49.169998 0.000000 0.000000} style solid width 3
Finally, you can start vmd, load the visualization state.
Good luck.
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