I need to create a taxonomic classifier to use on Qiime2 for the taxonomic classification of methanotrophic bacteria. I need suggestions on how to get known sequences (database) of the pmoA gene (fasta sequences, with ID) to create the classifier.
Hi Dasiel Obregon! Besides Fungene (which I'm not sure would be useful in your case), I found out this database yesterday: Yang, Sizhong; Wen, Xi; Liebner, Susanne (2016): pmoA gene reference database (fasta-formatted sequences and taxonomy). GFZ Data Services. http://doi.org/10.5880/GFZ.5.3.2016.001.