How can I make ancestral state for a phylogeny tree, which consist of sequences with diverse length?

26 July 2021 0 2K Report

Hello!

I'm using RAxML ng to make ancestral states for HA protein of influenza virus , and there is diversity in length of the sequences. But result of RAxML ng is sequences which all have identical length. do you know why this happens and , is there any other way to keep these diversity of the length?

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