I want to do normal mode analysis through ProDy i am not able to install on window platform please provide me step bu step method to install ProDy. I have tried website method it is not working in my case. i am not able to give python script path and prody path
If you want to do elastic network normal modes then the anm server is also an option. http://anm.csb.pitt.edu/cgi-bin/anm2/anm2.cgi
Nevertheless you should be able to install ProDy on windows.
In windows, you can define the path doing "My Computer" > "Properties" > "Advanced" > "Environment Variables" > "Path" and add the location of your python location. In order to use ProDy, you must have python (and some other libraries) already installed.
when we perform deformation and flucation analysis from bio3d i am able to generate R-fluct.pdb and R-defor.pdb but when i tried to open in pymol it only shows dot.
another i have problem to attach pymol to bio3d
We updated ProDy so it should be easy to install on Windows. Just use pip install -U prody.
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