How can I get start end coordinates of each chromosome of zebra fish genome? I need a karyotype file to draw circos plots between human and zebrafish?

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Sabine Strehl

Independent of the species, the sequence coordinates of Individual chromosome always starts with coordinate 1 and end with X, depending on the length of the chromosome. Links to the reference genome: Danio rerio (assembly GRCz10) can be found e.g. on NCBI http://www.ncbi.nlm.nih.gov/genome/?term=zebrafish

Hasan Mirza

Hi Farhan,

Go to: https://genome.ucsc.edu/cgi-bin/hgTables

Clade = Vertebrate

genome = Zebrafish

assembly =

group = All Tables

table = chromInfo

Click on get output, and save the content as text file (usually saves as tab delimited)

Let me know if any issue.