I have a gene list and I am trying to extract their corresponding probes in Illumina methylation EPIC array data. How can I determine the probes from the data for my known gene list?
Hi Anh Quang Do, this is most easily done using the R package containing the manifest for IlluminaHumanMethylationEPIC array data. I've written a short script (below), and attached the resulting table (.csv). From this, you can easily merge your list of genes with this annotation table...