if I were going to investigate soil moisture, I don't think I would choose MODIS, which works in the VIS and IR band, but a microwave imager such as AMSR-E. AMSR-E flies on the same satellite as one of the MODIS sensors (Aqua) and their homepage actually mentions a soil moisture product:
http://nsidc.org/data/amsre/
If you really want to use MODIS, there seems to be a publication out there which tries to compute soil moisture from MODIS. The abstract suggest the method has limitations but you can still take a look here:
Cai, G, Xue, Y, Hu, Y, Wang, Y, Guo, J, Luo, Y, Wu, C, Zhong, S, Qi, S (2007). Soil moisture retrieval from MODIS data in Northern China Plain using thermal inertia model. INTERNATIONAL JOURNAL OF REMOTE SENSING, 28(16), 3567-3581.
This system explicitly monitors soil moisture for 32 years
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The soil moisture data record was generated by merging two soil moisture data sets, one derived from active microwave observations and the other from passive microwave observations. The active data set was generated by the Vienna University of Vienna (TU Wien) based on observations from the C-band scatterometers on board of ERS-1, ERS-2 and METOP-A. The passive data set was generated by the VU University Amsterdam in collaboration with NASA based on passive microwave observations from Nimbus 7 SMMR, DMSP SSM/I, TRMM TMI and Aqua AMSR-E.
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This entire website is dedicated to RS of soil moisture and most of the work is done for you.
"Humidite du sol: pas facile du tout. J'avais develope un indice pour estimer l'humidite dans la vegetation (ceccato &al 2001,2002a,2002b) mais pour le sol nu c'est beaucoup plus difficile voir impossible avec MODIS. Il faut plutot utiliser SMOS ou SMAP qui sera bientot disponible.
Pietro"
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