Hello, I have a problem with one of the functions in Bio3d package in R programming language. The problem is that to have the analysis with "pdb2aln.ind" function, I should have a sequence file and tell the program to read it, but as I use the function "Read.Fasta" and give the FASTA file name to the program I face this error about the problem of my file. The file type is ".fasta" and I took it from PDB Database. Also I had another try and took the file from NCBI and nothing has changed.
I had tried to do some changes in the information mentioned in the file, but it didn't work. I am very appreciated if you help me with this.
If you get this error, surely your input file is not in fasta format. Fix it first.
Since your file name has spaces, I would try using UNIX form of your file name. In other words, try system.file("Mitochondrial\ protein\ import\ protein\ ZIM17") and see if that fixes it. Otherwise, I agree with the comment above.
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