To remove ammonium sulfate from the protein, pellet the protein in a centrifuge. Dissolve the pellet in a suitable buffer. Remove residual ammonium sulfate either by dialysis or by gel filtration chromatography. Measure the final protein concentration.
Hi Vinyas, just to add to Adam's answer, if you are going to do toxicity studies in animals, then you should do endotoxin testing on the proteins after removing the ammonium sulfate.