you can linearize the non linear system of equations to a linear approximation about an equilibrium point X0 in your variable space, by using Taylor series expansion and truncation at the linear term, which involves the Jacobian of the nonlinear system evaluated at the point X0.
Hi Shahram, to convert the nonlinear system into the matrix form, the nonlinear system maybe modeled as a linear parameter-varying (LPV) system. The following paper maybe helpful to you:
Cai, G., Hu, C., & Duan, G. (2011). Eigenstructure assignment for linear parameter-varying systems with applications. Mathematical and Computer Modelling, 53(5-6), 861–870. doi:10.1016/j.mcm.2010.10.023