HI,Can any one tell me how to obtain fasta format of the reference strains for detect avian influenza strains clades to classify the isolated strains?

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André Marquardt

Hey there,

try out this: https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/find-data/virus

You can find H5N1 in there but also any other known virus.

Hope this helps!

Greetings,

André

Abhijeet Singh

If you know how to get fasta format of the sequence from genbank format, you could easily get that on any of the public repository. Just try.

Md Zulfekar Ali

Good questions.

For AIV genes/sequences or any bioinformatics data you can collect from Influenza Research Database easily. Please follow the link and get your information. You can contact with me for any problem.

https://www.fludb.org/brc/influenza_sequence_search_segment_display.spg?method=ShowCleanSearch&decorator=influenza