I generated two datasets with 10X technology. One with 10X 3' (V3.1) with Total-Seq A technology (from Biolegend) and the second one with 10X 5' (V1.1) with Total-Seq C technology.
Does anyone already combined/compared in the same analysis those two types of datasets? If so, is there any correction I need to do to avoid any "chemistry" batch effect?
Thanks,
Julie