You will perhaps appreciate knowing a little background respecting my interest in genome analysis software. It actually began with inquiry into the nature of genome primers. it happens that the genetics worker would like to very precisely target genome manipulations, and this is facilitated when primers bind to exactly one locus of the genome; hence, shustrings.
This interest flowered into a full understanding of de Bruijn sequences, and a fair mastery of the corresponding graphs. This work also leads me to genome assembly technology.
I assume that you are familiar with the C language, or a variant thereof. I would like to share the critical source code of my algorithm for finding shustrings.
I would also like to ask you questions, as they may from time to time come up, regarding details of Haubold's algorithm. My goal is absolute mastery over the detailed operation of Haubold's code.