Yes, there is great amount of the MMN research, not only in auditory but also in visual domain: for review see Winkler, István, and István Czigler. 2011 (http://www.ncbi.nlm.nih.gov/pubmed/22047947). This research assume an automatic perceptual prediction - e.g. it does not require attention and a task. There is also evidence for processing of the missing stimulus in late cognitive potentials, e.g. Tarkka, I MStokic, D S. 1988 (http://www.ncbi.nlm.nih.gov/pubmed/9880172). For such response it is necessary build a temporal context - e.g. a predictable regularity (in some sense also the N400 is reaction to missing congruence).
The question is, however, oriented to unnoticed omissions. There are likely many reasons for such behaviour as blinks, saccades, or an increase of the alpha activity with fatigue, which then suppress the perception. These papers are also numerous (google for alpha activity sensory suppression).
It would be interesting to see if there is the MMN when a predictable target is missed.
This is being sent by her husband Professor Roger Broughton. You should contact our colleague and friend Ken Campbell of the University of Ottawa who has done this. [email protected]. (double check his email address in his many publications on ERPs.
I suggest Jongsma et al, Psychophysiology 2005, 191-201, which contains an extensive set of references on the topic (also the 1967 seminal study of Sutton and coll). The literature on this issue (ERPs from omitted stimuli: emitted ERPs) is relevant.