Any recommendations for software to visualize SNPs of a circular DNA sequence (e.g., plasmid or virus) from two aligned FASTA sequences?
Did you try MEDEA? http://www.broadinstitute.org/annotation/medea/circular/
@Luca I have not, but I will give it a try! Thanks
Circos (http://circos.ca/) is a very popular tool based on a circular layout of plots
@Michael Thanks! That is exactly what I was looking for. Took a little while to configure what I wanted, but well worth the effort given the excellent output.
What are the possible theoretical or technical explanations for higher/lower levels of one part of a polycistronic transcript versus another part? For example, a single transcript encodes...
10 November 2012 2,207 7 View
How to calculate the RMSD values for a MD simulation using MOE?
07 August 2021 0 0 View
When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.
16 June 2021 0 0 View
Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...
03 March 2021 8,796 3 View
I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance
03 March 2021 3,568 1 View
Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...
03 March 2021 5,978 5 View
What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...
03 March 2021 1,401 3 View