GROMACS output is a multimodel PDB file containing 100 structures of a protein. PyMol reads only the first model, and I need to view all 100 models separately.
Thank you, dear Stephane, your answer is very helpful )))
just remove all middle lines between structure. In Linux you can easily do that by something like this:
grep -v -i -e "END" yourfilenae > yournewfilename
This simply remove all END from you file. Then you are good to see you structure in PyMol. or VMD.
Nice aproach, Noorjahan ! I should have guessed it myself, Respect
Look at here for several solutions in Bash, Perl, Awk and Python:
https://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Split_NMR-style_multiple_model_pdb_files_into_individual_models
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