Niyaz Safarov

3 Questions 23 Answers 0 Followers

Questions related from Niyaz Safarov

Does anyone have information on missing loop residues coordinates?

Dear Friends, Does anybody know if there is a free program with gui to restore the coordinates of a short missing loop in a single protein chain. There are only 5 residues in the loop and the...

09 September 2014 7,855 6 View

How can we get back from the ligand-bound conformation of a protein to a ligand-free one?

There is a .PDB strucrure (X-ray) of a ligand bound protein. It is known that the ligind binding leads to moderate conformational changes around the ligand-binding site. Is it possible to obtain...

08 August 2014 3,565 4 View

Does anybody know how to split a multimodel PDB file created by GROMACS?

GROMACS output is a multimodel PDB file containing 100 structures of a protein. PyMol reads only the first model, and I need to view all 100 models separately.

04 April 2014 7,006 4 View