GROMACS output is a multimodel PDB file containing 100 structures of a protein. PyMol reads only the first model, and I need to view all 100 models separately.
Abolfazl Noorjahan
just remove all middle lines between structure. In Linux you can easily do that by something like this:
grep -v -i -e "END" yourfilenae > yournewfilename
This simply remove all END from you file. Then you are good to see you structure in PyMol. or VMD.
1 votes
1 thanks
- Badges
- Science topic
More Niyaz Safarov's questions See All
Similar questions and discussions