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Changming Sun Popular answer

Or try this: http://fiji.sc/Fiji

Sina Safayi

Try this: http://www.cellprofiler.org/

Changming Sun

Nacer Dilmi

try image J

John Sosa

I would defintely recommend you visit www.MIPAR.us.

It is very powerful and intuitive 2D/3D image analysis software written by scientists/end-users and is about to be released as a free trial on December 14th. You can sign up on the site as well as submit images/datasets to test.

There are many image analysis options available, but I think you may just find MIPAR to be something special if you give it a try!