Dear colleagues,

I am currently working on the expression of two proteins encoded within the same operon. According to the literature, they seem to be expressed consecutively, suggesting coordinated regulation for their function in assembly and activity.

In my case:

  • The first protein (HrcN) is a hexameric ATPase, with a molecular weight of ~50 kDa as a monomer (and ~300 kDa in its functional hexameric state).
  • The second protein (HrcO) is monomeric, adopting a long helical structure, with a molecular weight of ~20 kDa.

Methodology I am using a plasmid construct that contains both genes. Only HrcN carries an N-terminal His6 tag (see attached scheme). Since both proteins are translated independently, my questions are:

  • Regarding SDS-PAGE detection: Is it likely that both proteins will be visible on the gel, considering their different molecular weights? Or would the untagged protein (HrcO) be lost during purification, resulting in detection of only the ATPase?
  • Possible strategies for detection and analysis: Would scaling up the expression volume improve the chances of detecting the 20 kDa monomeric protein? Could a native PAGE help to better visualize the functional complex (ATPase hexamer together with the accessory protein)? Would using more sensitive staining methods, such as silver staining, be advisable to detect the smaller untagged protein?
  • I would be very interested to hear from anyone with experience in expressing proteins from the same operon, especially in cases where only one carries an affinity tag.

    Thank you in advance for your suggestions and insights.

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