Hello everyone! Did anyone  carry out compositional homogeneity analysis using phylobayes? In phylobayes 4.1 manual, the -comp argument of ppred was said to accomplish this goal. however, in the pb_mpi 1.5 manual, the  -comp argument of

readpb_mpi was said to accomplish this goal. DOes anyone know when and how to carry out this test? By the way, I have already run the command " /pb -d *.phy -cat -lg -dgam 4 -s -nchain 2 100 0.3 50 run-name".