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Questions related from Tree Happy
P4 is a Python package for maximum likelihood and Bayesian analysis of molecular sequences., it is also a phylogenetic toolkit. Recently, I was trying to install p4 on Linux. I downloaded the...
06 June 2017 4,949 5 View
Hello, everyone: Recently, I was trying to build 3D structure of one protein which has no crystal structure, I was wondering some questions. First, what are the lowest threshold of sequence...
15 May 2017 7,987 2 View
Hello everyone! Recently, I was running phylobayes, I wondered that whether it makes sense to run ppred on the protein alignment with length of 118 AAs. I suppose that the length of the alignment...
26 December 2015 4,717 1 View
Hello everyone! Did anyone carry out compositional homogeneity analysis using phylobayes? In phylobayes 4.1 manual, the -comp argument of ppred was said to accomplish this goal. however, in the...
04 December 2015 1,817 1 View
Hello everyone, recently,when building phylogenetic trees, I run into one question-how to combine the support values from two trees into one single tree? which software or which method is the best...
30 November 2015 4,713 5 View
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20 April 2015 4,293 3 View
Helllo, does anyone know which method and software is best for the detection of saturation of amino acid alignment and nucleotide saturation? And if the saturation is detected, how can I utilize...
20 January 2015 6,580 7 View
