Tree Happy

5 Questions 8 Answers 0 Followers

Questions related from Tree Happy

What's the basic criterion about 3D structure prediction of protein?

Hello, everyone: Recently, I was trying to build 3D structure of one protein which has no crystal structure, I was wondering some questions. First, what are the lowest threshold of sequence...

15 May 2017 7,979 2 View

How can I interpret the result of ppred program inplemented in the software package of phylobayes?

Hello everyone! Recently, I was running phylobayes, I wondered that whether it makes sense to run ppred on the protein alignment with length of 118 AAs. I suppose that the length of the alignment...

26 December 2015 4,709 1 View

How can I combine support values generated from different method into one single tree?

Hello everyone, recently,when building phylogenetic trees, I run into one question-how to combine the support values from two trees into one single tree? which software or which method is the best...

30 November 2015 4,704 5 View

How do I test for compositional homogeneity?

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20 April 2015 4,286 3 View

How do you detect saturation in amino acid alignment and nucleotide?

Helllo, does anyone know which method and software is best for the detection of saturation of amino acid alignment and nucleotide saturation? And if the saturation is detected, how can I utilize...

20 January 2015 6,573 7 View