I just read that the first naledi fossil was a mandible which had collapsed from the breccia above. The morphological comparative evidence is clear IMO: naledi (humanlike plantigrade feet, more flamingo- than ostrich-like) were wetland waders, who collected aquatic herbaceous vegetation (& probably other foods) like lowland gorillas regularly & bonobos occasionally do, but much more frequently: this also explains their bonobo-like features, e.g. the curved manual phalanges (for climbing in the branches above the swamp like bonobos do). When they died in the swamp, their bodies got almost immediately covered with mud, which could explain why the fossils are remarkably complete. But I'm no geologist: the caves below the wetland eroded away, but how exactly could the fossils end up in the Naledi cave?