Could you please introduce a web server to find similar RNA 3D structures?

More Morteza Hadizadeh's questions See All

Is it possible to add a source term to the momentum equation in ANSYS CFX?

I want to add a source term as a body force to the momentum equation in Ansys CFX for modeling the VGs and I don't know how do it !!

21 February 2021 2,971 4 View

Is there any publication about the effect of basketball and volleyball on body height?

Many people believe that some stretching sports with vertical jump such as basketball and volleyball can increase the body height. On the other hand, others do not agree with this argument. The...

02 February 2021 281 6 View

What aspects of communication skill improves significantly regarding to the Autism Spectrum Disorder using PECS?

Children with ASD need a clear and effective way to communicate to reduce frustration and replace challenging or unacceptable behaviours (Beukelman and Mirenda, 1998; Webb, 2000). Augmentative and...

19 January 2021 1,160 3 View

Hi, I have a question about the calculated band structure for 2Dmaterials?

please help me to choose the best source and theoretically calculate band structure for 2Dmaterials( graphene, MoS2,...)? thanks a lot.

12 January 2021 2,748 3 View

How to save data files with .dat format instead of .dat.h5 format in transient simulation by ANSYS Fluent autosave option?

Hello everyone, I am using the ANSYS 2020 R2 version. I am simulating a transient setup, and I set an autosave. but the solver gives me .cas.h5 and .dat.h5 files instead .cas and .dat format....

11 January 2021 3,033 3 View

2) How can online learning be enhanced in the context of Covid-19 disease?

Although online education is a good alternative to the face-to-face education system in critical situations such as the current situation, but due to the sudden occurrence and rapid spread of the...

11 January 2021 3,734 4 View

Is it possible to introduce a 2D axis-symmetric model in COMSOL Multiphysics to solve electromagnetic waves?

Hello dear researchers. I want to solve a cylindrical waveguide, lick an ordinary standard optical fiber. I am familiar enough with the 2D-axis-symmetric model, but as I knew from the equations...

11 January 2021 6,663 6 View

How to select negative values in row?(at least two negative values & more together) in Rstudio?

hello my dear friends i have a time series includes 324 month (SPI values) i wanted to extract and select them like this picture in R studio, i don't have any idea which package or command to use...

20 November 2020 916 4 View

Effect of anesthetics drugs on coronavirus patients?

What is the reason for the ineffective or insignificant effect of Neuromuscular relaxants such as Atracurium and anesthetics such as Ketamine on patients with Coronavirus hospitalized in the...

22 September 2020 5,734 4 View

Plz Recommend a Residential Energy Consumption Dateset?

Dear All, For my research about data mining in building energy, I need residential energy consumption' but with these requirements: -appliance level (like refrigerator..) -at least 40 valid...

04 September 2020 1,404 2 View

Gel electrophoresis result for total RNA samples, 1.5 Agarose gel was used, How to improve the integrity of RNA?

Gel electrophoresis, RNA degradation, RNA extraction from fresh tissue

02 March 2021 5,433 5 View

Problem with shRNA transfection. Why are only two plates getting contaminated instead of all?

I transfected my LNCaP-WT cells with 3 shRNA plus their NTC two weeks ago and split two puromycin selected cell plates on Friday last week(Feb 26). I checked for GFP in the cells, and they all...

28 February 2021 4,949 3 View

Any specific pipeline or parameter to analyse total transcriptomics study of brain tissue samples?

I have two groups of brain samples, control and treated for example. It was total RNA nova seq sequencing. I tried all the available pipeline like: star+rsem+deseq2, Hista+stringtie+cuffdiff,...

27 February 2021 356 6 View

Why is the efficiency of viral mRNA electroporation in PBMC low?

Hello, I have been struggling with the electroporation of PBMC with HIV-I mRNA. Although the quality of the RNA generated is good, and the handling of the cells in meticulous, the frequency of...

27 February 2021 9,233 3 View

What software programs can directly simulate Additive Manufacturing Directed Energy Deposition (DED)?

I understand there are a lot of software programs that can simulate DED by going through specific modeling, simulation, and commands. For me, that was time consuming and results were not accurate....

24 February 2021 4,428 3 View

What is the best concentration of cDNA to be used for qPCR?

I have synthesised cDNA from 500ng/ul of RNA. The concentration of the cDNA Is about 5000ng/ul. Should I dilute my cDNA or just use it as it is for my qPCR? I usually use 2ul of cDNA for a 20ul...

24 February 2021 8,618 3 View

Recommendations on homogenizers for RNA isolation?

I will be performing RNA isolation with frozen lung biopsy samples and am in the market for a tissue homogenizer. I am wanting a homogenizer that will fit in a 1.5ml tube. I was looking at the...

24 February 2021 3,623 3 View

RNA-seq DEGs downstream analysis and reporting in literature?

I used EdgeR to get the list of DEGs (differentially expressed genes) from my liver RNA-seq experiment. I have done the gene overrepresentation and GSEA based pathway analysis. I am currently...

23 February 2021 8,969 1 View

Is it efficient to do liquid biopsy to investigate the gene expressions of the tumor?

To do liquid biopsy and look for specific gene expressions there are so many published papers. Thera are different protocols and procedures used to isolate circulating cell free RNA or mRNA from...

23 February 2021 7,326 5 View

I am looking for a simple software program to model 3D chemical bonds. The purpose is to generate high-quality graphical abstracts. Any suggestion?

Hello everyone: I am looking for a simple software program to model chemical bonds. The purpose is to generate a high-quality graphical abstract for a top leading journal in the field of...

23 February 2021 8,012 3 View

Eman Bassiony

RNA composre

http://rnacomposer.cs.put.poznan.pl/

SimRNAweb

https://academic.oup.com/nar/article/44/W1/W315/2499311

A good software for analyzing 3D moiling RNA is Rosetta , but it needs a license.

you can have a tips for how to use it here :

https://www.rosettacommons.org/demos/latest/Home#tutorials

Hope it is useful !