Could you please introduce a web server to find similar RNA 3D structures?

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Eman Bassiony

RNA composre

http://rnacomposer.cs.put.poznan.pl/

SimRNAweb

https://academic.oup.com/nar/article/44/W1/W315/2499311

A good software for analyzing 3D moiling RNA is Rosetta , but it needs a license.

you can have a tips for how to use it here :

https://www.rosettacommons.org/demos/latest/Home#tutorials

Hope it is useful !