Dear collegues, how can I estimates copy number variation across different S. cerevisiae strain geneome sequences with "in silico" approach?
Dear Enrico
Check this publication, hope this will help u
Saxena, Sonal, et al. "Improved Multiplex Ligation-dependent Probe Amplification (i-MLPA) for rapid copy number variant (CNV) detection." Clinica Chimica Acta 450 (2015): 19-24.
One of the easiest approach is Ginkgo (http://qb.cshl.edu/ginkgo) . It was published for low coverage / single cell data. Check it out if you like.
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