21 December 2022 0 721 Report

Hello

How to perform community network analysis using GROMACS trajectory

Thank you so much

More Amnah Alalmaie's questions See All
PME calculation on a GPU GROMACS?

Hi all I used the following script to run the simulation but for some reason, I was not able to assign GPU to do the PME calculation? How to do that? The size of the system is huge (600.000...

14 January 2021 7,441 1 View

Optimizing GPU performance on GROMACS ?

Hi My system I am trying to simulate has 600.000 atoms. I want to simulate for 1 us I am using a supercomputer to run the simulation with tesla K80 GPUs. I am using 1 node and a total of 28 core...

08 January 2021 4,666 1 View

Terminal 5' phosphate in DNA simulation using AMBER FF in Gromacs?

How to add a new termini database entries in amber FF for phosphorylated at 5'- and 3'-termini of DNA? Pdb2gmx is not able to covert pdb to gro files could you please help me?

22 September 2020 8,356 7 View

Solubility of PEG epoxide?

hello Is polyethlene glycol ( 5000 D) soluble in aceton and ethanol?

12 November 2018 2,083 1 View

Adding chromophore to PEGylation reagent?

PEG does not have chromophore do you know how to add a chromphore to make it detectable by UV detector? what is the chemistry behind that can anyone help me with that thank you

10 November 2018 4,595 1 View

Solubility of PEG epoxide?

hello Is polyethlene glycol ( 5000 D) soluble in aceton and ethanol?

10 November 2018 9,451 1 View

Effect of Gelatin on Mice?

could you please provide me with some articles that done experiments on mice by using plain Gelatin? I want to study the effect of plain gelatin on mice

09 October 2018 9,349 0 View

MTT incubation time?

Hello The standard time in our lab is 4 hrs for MCF-7 but the goal of my experiment is to study the effect of assay? The standard time in our lab is 4 hrs for MCF-7 but the goal of my...

03 April 2018 3,694 4 View

Similar questions and discussions
What is the most Operating System (OS) which can be INSTALL on Tiny hard devices like Raspberry Pi (RPi) hardware ?

I'm targeting to deploy a mesh network and manually configure MANET routing protocols. I'm preparing scenarios, architectures, and hard devices needed to do that. Are there some step-by-step...

03 March 2021 1,931 5 View

Is there a powerful system for the security of the systems distributed on IoT systems?

Is there a powerful system for the security of the systems distributed on IoT systems?

02 March 2021 3,858 10 View

How to choose ANN number of hidden layers and nodes?

Hello, Could you please share any interesting research explaining how to choose the number of hidden layers and nodes per layer in case of regression problems using ANN? Thank you, any help would...

01 March 2021 6,200 3 View

The Shannon's index is inversely proportional to Simpson's index (1-D)?

I'm having a problem with my bloxplot with Shannon's and Simpson's indexs. The value of Shannon for my Community 1 indicating higher diversity (in relation of the Community 2), but have lower...

26 February 2021 3,033 9 View

How to sample data to increase presence of solar panels in the images?

I am working on creating deep neural network on geospatial dataset and wanted to know how to do the sampling so that I can increase the presence of solar panels in the images. I cannot use entire...

25 February 2021 3,936 6 View

Satellite orbit estimation using Recurrent Neural Network - what should I use?

Hello, I am a master's student studying in Yonsei Univeristy, Korea. I am trying to estimate the state of satellite, using Neural Network. Below is a simple flow of my study. 1. Train (t0 ~ t1)...

23 February 2021 6,383 3 View

How to run repeated measures in mvabund?

I have a dataset of fish species abundances collected from 6 different habitats over the course of 30 years. Fish were collected multiple times per year and environmental variables were recorded...

21 February 2021 3,838 1 View

Any methods to train a neural network with random (stochastic) and non-measurable variable?

Dear scholars, I was wondering if there are any scientific methods to train a neural network or ANFIS when one of the input variables is stochastic (random) and more importantly non-measurable?...

17 February 2021 1,909 3 View

Does anyone know what are the pros and cons for using autoencoders instead of CNNs for features extraction in neural networks?

Are there papers that talk about the possible advantages and disadvantages of using autoencoders instead of CNNs for feature extraction in neural network?

15 February 2021 6,952 3 View

What are the popular techniques for pre-processing measurement data in Smart Grid/Power System?

The data collected from various measurement devices often contains erroneous values - such as noise, missing values, etc. What are the popular techniques for pre-processing measurement data in...

14 February 2021 4,642 2 View

Our partners will collect data and use cookies for ad personalization and measurement. Learn how we and our ad partner Google, collect and use data. Agree & close