whether GROMACS can do rmsd restrain of a protein it its starting conformation throughout the whole simulation?

Hi all. I have a query. It is about Whether GROMACS can do rmsd restraint of a protein throughout the whole simulation. I found Gromacs can do only position restraint. But my intention is the...

21 November 2020 481 4 View

What is the best Discrete Element Method (DEM) solver, that can be used to for granular packing of super-ellipsoid particles ?

I am interested in packing primary particles defined by super-ellipsoid equations under the influence of particle particle interaction involving friction, torque and reducing particle to particle...

27 October 2020 9,031 1 View

Is it possible to simulate only a particular higher order mode in CST Microwave Studio?

Consider the case of a WR-90 rectangular waveguide (a = 22.86 mm, b = 10.16 mm). If I want to see the fields etc. for say the TE02 mode in CST MWS is it possible to simulate it in particular?...

29 September 2020 8,572 11 View

Where can I find online available current data for Induction Motor or Synchronous Motor stator inter turn fault ?

I am working on the project of developing an algorithm for stator inter-turn failure diagnosis. For that, I am looking for online available data of the current signal from the faulty machine.

08 May 2020 4,667 1 View

Can anyone provide a solution to "severe error message 2070" in Gaussian during perovskite optimization?

Hi All, I have imported a .cif file into Gaussian09 and I am trying to optimize its structure. During the optimization there is an error message "severe error message 2070". When I check the files...

24 November 2019 970 4 View

Has anyone experienced missing nucleotide sequence even without any perturbation?

I have experienced a strange thing while my recent cloning. After I had sequenced my clone i noticed that a part of the nucleotide sequence got missing from the plasmid backbone. I have not done...

09 September 2019 4,914 2 View

Microstrip line Characteristic Impedance?

I have 2 questions related to Microstrip Line characteristic impedance: 1) What would be the relation of characteristic impedance of a given microstrip line with frequency? As effective...

09 April 2019 3,728 5 View

Can anyone please solve this question?

A single-phase load is fed through a 66-kV feeder whose impedance is 120+j 400 Q and a 66/6.6 kV transformer whose equivalent impedance (referred to LV) is 0.4 + 1.5 . The load is 250 kW at 0.8...

22 November 2018 8,346 2 View

What is the appropriate methodology to apply shockwave theory at weaving sections?

I want to apply the shockwave theory to the traffic behaviour at weaving section with an auxiliary lane. What is the appropriate methodology? Is it appropriate to apply the theory of moving...

25 March 2018 4,078 4 View

What could be the possible reasons for double drainage samples having larger instant deformation than single drainage samples?

26 November 2017 4,794 2 View

How to analyze a particular region of my simulation box in GROMACS?

Hi, I am using GROMACS 5.1.4 to simulate water in contact with a surface. I am only interested to calculate some properties of water near the surface. Let's say at a distance of x nm from the...

03 March 2021 9,989 2 View

How to get onecolumn document from standard IEEE ACCESS LateX template?

I have prepared a manuscript in IEEE Latex template, but for some purpose, I need to prepare a word file as well (detailed format is not required). Compared to two column .tex file, one column...

02 March 2021 1,830 3 View

How can the modification of garden soil cause global warming?

Hello, I am working on a soil project and I found a primary research article that tests how the modification of agricultural soil can cause global warming, using a thermal collector, however I...

02 March 2021 7,161 3 View

Does anyone know how to plot my station to a section plot on Ocean Data View (ODV)?

I made a vertical section plot with WOA .nc file on ODV, and now I want to plot my stations (csv. file) in it. Does anyone know how to import my points to the section? They are two different...

01 March 2021 3,610 1 View

Does anyone know to clarify these changes?

01 March 2021 1,290 2 View

How can I convert .vesta file to a .cif file?

I've used the "export data" option in Vesta software to convert my unit cell into a cif file however when I use that cif in atomsk it shows error such as "can't read the position of atom 0". If I...

28 February 2021 4,966 3 View

How can we use a hybrid element in Abaqus Dynamic/Explicit for impressible materials?

Hi, all! How can we use a hybrid element in Abaqus Dynamic/Explicit for impressible materials? I have not find the choice for explicit element in Abaqus CAE. I am wondering whether it is possible...

25 February 2021 9,936 2 View

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25 February 2021 5,713 1 View

Anyone that can help with Maxquant TMT16plex which is missing?

Hi I am very new to proteomics analysis. I have got raw files from core facility running thermofisher TMT 16plex 4 hours. I cannot find on maxquant the option TMT16Plex there is only up to 11...

25 February 2021 1,675 3 View

How to search for crystal structure for material with atomic position labelled?

I am using the crystallographic open database and materials project to search for cif file but the exact structure is not mentioned or how can I deduce that the given structure and atomic position...

23 February 2021 6,723 2 View