Hi all,

I have an RNAseq data and I am trying to analyze it with GSEA software. In GSEA, both the options are available - "Control vs Treated" and "Treated vs Control". Usually, we analyze results in the control vs treated setup.

I want to ask, can I run "Treated vs Control"? I mean, is such analysis accepted? Can I publish data in such "treated vs control" format?

Thanks in advance

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