Can anyone tell how to install gromacs on Ubuntu 14.04 ?

More Udhaya Kumar's questions See All

Is there a Gromacs Tutorial to add a residues to a force field and modifying a .rtp, .itp, atomtypes.atp and residuetypes.dat file?

If anyone have gromacs tutorial to a new residue to the topology. The protein which I am working on has 4 NAG (N-acetyl Glucosamine) and 1 ALS (2-amino 3-oxopropionic acid). These residues were...

05 June 2015 2,207 3 View

Why do I get huge fluctuations in RMSD when I simulate a protein in 20ns using Amber99sb force field in Gromacs 5.0.4?

I have followed the "Tutorial for Trypsin-‐Benzamidine complex molecular dynamicsstudy" (pdf file attached below) and some of the inputs i have changed according to my protein name and ligand...

02 March 2015 6,121 7 View

How to include the residues N-acetyl Glucosamine (NAG) and 2-amino 3-oxopropionic acid (ALS) in gromacs 4.6.5 version's topology ?

My protein has 4 NAG and 1 ALS residue in its sequence. When I tried to simulate the protein using gromos96 53 a6 force field , it's showing a fatal error as: residue 'ALS' not found in residue...

31 December 2014 6,092 4 View

How to install Tinker (Molecular design software) in ubuntu 14.04 version ?

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11 December 2014 6,319 3 View

What are the installation and simulation procedures for the AMBER tool?

See above

04 May 2014 1,013 1 View

GC-MS retention index prediticon?

Hello experts, Does anyone know any free software about retention index prediction ?

08 August 2024 7,403 2 View

Gromacs first step of minimization ?

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07 August 2024 2,598 1 View

Are there instances where molecules with larger molecular weights exhibit greater mobility than those with smaller molecular weights?

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06 August 2024 1,495 2 View

For an in-vitro drug release study, what molecular weight cut-off (MWCO) dialysis bag is required for a 117 kDa protein?

kindly reply me. Thanking you in advance.

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How to start a Molecular Dynamics Simulation?

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Which will be the best software for the Hydration shell analysis with molecular dynamics?

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02 August 2024 3,143 4 View

Can anyone provide me with molecular docking softwares/ websites?

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Can we patent a process flow diagram developed using a process simulator but no actual cases is carried out?

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31 July 2024 781 1 View

CAD File of human's & rat's respiratory airways ?

Dear all, I am working on particle deposition in human's & rat's respiratory airways using CFD and I am looking for the 3D CAD file for my simulations (STEP or IGES format). If somone has such...

29 July 2024 1,092 2 View

Why running a restart analysis in Abaqus in Ubuntu OS gives an error as attached when running the same job in Windows doesn't give any error and runs?

I am trying to run a restart analysis, which imports deformed configurations of parts from a generated ODB file. It runs fine in Windows OS but when I try to run it in Linux OS, it is giving some...

29 July 2024 9,572 3 View

Justin Lemkul

There is no required or matching version; you can install any one you like. When starting a new project, use the latest version of Gromacs, which at this point is 5.0.3 (though 5.0.4 will be released very shortly to fix some small bugs).

Danish Jasnaik

Hi,

If you are using a BioLinux variant then there is noo need of any steps just click on the install button and done.

Matthias Ernst

Why don't you want to use the package manager (sudo apt-get install gromacs)?

Debasish Mukherjee

follow the steps it works for me like magic

http://ubuntuforums.org/showthread.php?t=2305313