Hi,
One of my protein of interest exhibits a lipid peroxidase activity. I have solved the X-ray structure of the protein alone which has a hydrophobic channel.
I’m looking for a software adapted to docking driven by hydrophobic interactions.
Autodock software is good for docking lipids to proteins
http://autodock.scripps.edu/
After docking, hydrophobic interactions you can study using Discovery studio
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