Behnam Bakhshi
You can use TSSP online tools.
Link: http://www.softberry.com/berry.phtml?topic=tssp&group=programs&subgroup=promoter
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S. Antony Ceasar
We use tools like PlantProm, PlantPAN. Further, regulatory
elements could be analyzed using the PLACE database.
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Yuan-Yeu Yau
We have discussed a similar question on RG before, about promoter region analysis.
It will be useful if you can read it, especially the suggestions from Dr. Paul Rushton.
Question: "Is there a standard protocol for promoter analysis? (What is the best protocol for this approach? I will be thankful if you could provide me a website or other sources. Is there an algorithm for it?)"
https://www.researchgate.net/post/Is_there_a_standard_protocol_for_promoter_analysis2/1
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