For each V(D)J segment there are potentially 2 allelic variants within the same person. Can both of these be expressed (in different cells of course) or is the same one always shut down during B cell development?
Hi, this is one of the fascinating issues of the adaptive immune system evolution!
The core of the 1957 clonal selection theory by Macfarlane Burnett can be simplified in the rule: one cell - one antibody. In principle, there are several mechanisms to ensure the expression of only one allele, known as allelic exclusion mechanisms. You can read nice updated reviews on that subject, for instance:
As you said, I know relatively well the basics of clonal selection with "one cell, one Ab", but what I don't quite get is if >1 allelic variant (e.g. IGHV1-2*01 and *02) can be expressed in the same individual (at large), meaning; when is the allelic variants shut down in the differentiation process of stem cell to B cell?
I guess it could also be that it's not that common with allelic variants in the genome within a single person anyway (for Ig genes), but It must occur sometimes.
The reason I'm wondering is due to the potential of finding both variants when performing deep sequencing (possibly messing up the data slightly, since I'm mainly working with nonhuman primate sequences and not with beautiful databases that exist for mice and man)