In R, there are two implementations of the Breusch-Pagan test: bptest from the lmtest package and ncvTest from the car package. Besides the option of studentizing the result, the two functions differ in a critical way:
Unfortunatley for my data (average DTI indices for several white matter tracts), the two options, when non-studentized, disagree quite often.
If the two approaches differ substantially in their results, what would be an appropriate strategy to choose, and potentially justify, either approach?