Best ATAC-Seq Pipeline?

20 January 2022 1 7K Report

Soon I will have to analyze some ATAC-Seq data, I was evaluating the pipelines currently available ... that it is simple to install (maybe conda) and to use ...

I was considering:

https://academic.oup.com/nargab/article/3/4/lqab101/6437641

https://vanheeringen-lab.github.io/seq2science/content/gettingstarted.html

https://snakepipes.readthedocs.io/en/latest/content/setting_up.html

Any experiences or suggestions?

Juan Camilo Sánchez-Arcila

Maybe you want to start reading this paper :)

Article From reads to insight: A hitchhiker's guide to ATAC-seq data analysis

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