Integral and uniform modeling of hardware (both analog and digital), software (both system and application), and cyberware (knowledge structures, ontology contents, and data structures) of complex systems in the pre-embodiment and embodiment phases of development seems to be a challenge. Finding methods and tools, which cover each of the three domains, is difficult in the literature. Please advise if any trans-disciplinary method exist for architectural and operational, or possibly for a hybrid modeling, of complex systems.

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