Google knows more than I do.

I am presuming you are referring to MD (or MM type simulations) if not please elaborate upon your question.

Most Web based options are going to be just for preparation and analysis. Full motion simulations, especially with explicit water, become very cycle intensive quickly, thus are set up on high compute systems.

Most existing pre-setup systems available to researchers at none to low cost exist within schools or as national/international collaborations to which you will have to apply to, to get access.

this include (but are not limited to) https://www.wenmr.eu, http://www.opensciencegrid.org/, https://www.xsede.org/) eligibility criteria vary.

Other groups like Google exacycle and amazon cloud will give you research grants and academic usage discounts.

PS if you are interested, and have some experimental data to go with it I may be able to set you up with a run or so as a low level collaboration on

Dear Selviraj,

Here are the attached links that you can check for your need

http://smog-server.org/

http://haddock.science.uu.nl/enmr/services/GROMACS/main.php

Your question is ambiguous. If you could elaborate , I can suggest you better

Cheers

Looks like you can run http://www.acellera.com/support/documentation/ which includes Amber, Charmm and OPLS force fields, at https://aws.amazon.com/marketplace/pp/B00Q5ECSOG

Thanks for all.

Hello Jacob Pessin,

     I am looking for molecular dynamics servers online.

A lot of information has been already posted. I just want to add one: CABS-flex (Server for fast simulation of protein structure fluctuations).