Are there any free Insilico SNP analysis tools?

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Pawel Buczkowicz

You can use Genotyping Console from Affymetrix.

http://www.affymetrix.com/estore/browse/level_seven_software_products_only.jsp?productId=131535#1_1

Simon J Labrie

There are lot of tools for SNPs analysis. What type of data do you what to analyze ?

I have been using GATK from the Broad Institue and LoFreq to answer completely different questions.

Lesitha J

Check SNP Analyzer, snpEff, SNPeffect

Tarunveer Singh Ahluwalia

The question should be reframed as to what kind of analysis you need to do with SNP data?

Abhishek Tyagi

SNP analyser