I am calculating the FST (overall and pairwise) and FIS (overall and per site) estimates and corresponding confidence intervals (CI). The functions I am using in R (from hierfstat) allow me to specify the bootstraps. I have always left the default of 100 bootstraps. Now I am wondering, is it enough for my 5000 snps data set?

Thanks to whoever will help me,

Best,

Giulia

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