I am interested in measuring the thickness of flatworms in whole mounts. I am considering using the micrometric knob of the microscope calibrated against a know thickness. Has someone any idea or experience to share?
Your method should be relatively easy if your microscope is equipped with a motorized stage. Else I don't see how you will know exactly where you are, unless you have a finely graduated meter on the stage. Mitutoyo sell products to measure thin objects. They have microscopes especially designed for that or, if you don't want to pay for a miicroscope (I don't know how much they sell), a micrometer gauge could do the trick (although less precise, and you'll have to subtract the slide and coverslip thicknesses).
Should make a plasticine model (take fixed amount of it - eg 10 ml) and calculate the coefficient of form. After that recalculate for actual length! Look Nesterenko & Kovalchuk paper (Acta Hydr. Hydrobiol) in my RG site.
Juan. Presumably, you refer to existing whole-mounts (likely squashed already), which cannot be unmounted and sectioned. Perhaps you could look at laserscan or other 3D microscopes which can re-assemble images at 90 degrees or 3D software, e.g. http://dx.doi.org/10.1371/journal.pone.0077650