Vivian Panes

4 Questions 5 Answers 0 Followers

Questions related from Vivian Panes

How are the read lengths in the RNA seq analysis determined? What software should be used in determining the read lengths?

I have an RNA seq data, it is a result of denovo assembly. I would like to know and understand how read lengths are determined because I don't have a data concerning my read lengths.

14 September 2015 8,305 5 View

I have RNA-seq files that are in fastq format but are of GZIP type. How do I open or unzip the GZIP file into fastq?

I have RNA-seq files that are in Fastq format but are in GZIP type. I want to convert or open this GZIP files into Fastq. What is the best software to use for this purpose?

20 November 2013 1,049 6 View

To what does the term "reads" refer to in the RNA-seq data?

My question is about the RNA-Seq technique. How many reads are there in the cDNA produced from the mRNA molecule and what is the average length of these reads and why are those reads so short?

19 November 2013 7,602 0 View

Does the size of the DNA molecule in base pairs correspond exactly to its sequence?

Does the size of the DNA fragment appearing in the agarose gel measured in base pairs (bp) correspond to the number of the bases in the sequence of that DNA fragment? For instance if the size of...

20 May 2013 4,294 5 View