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Questions related from Victoria Shabardina
Dear all, I am very new in the TE field. I have run RepeatModeler on a newly assembled genome and as a result got the following files: families.stk and consensi.fa. As I understand, consensi.fa...
21 June 2022 9,350 1 View
Dear all, I have found some proteins sequences in my custom protein database using blastp. Further I built the hmm model using hmmbuild using the alignment of the sequences from my blastp output...
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Dear colleagues, I am extracting a genomic DNA for sequencing with nanopore, and therefore am very cautious about quality checks. Recently I eluted the same DNA sample from a purification column...
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Dear ReserachGaters, the work with PAL2NAL is never simple for me (maybe its just me). Is there any other program I can use for preparing a prot/nuc alignment for analyses with PAML? Thanks and...
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Dear all, I need to know the "coverage" of sites in vcf files, but the files i am working with do not contain DP info, only AD. Most of the tools for vcf parcing use DP parameter. I understand...
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Dear colleagues, is there a database which contents the correspondence between gene id and protein id for a species? (I have two data sets for the same organism, including either gene id or...
28 August 2016 840 6 View
