Tal Gutman

5 Questions 2 Answers 0 Followers

Questions related from Tal Gutman

Where can I compare gene expression levels for cancerous tissues vs. normal tissues?

ICGC/TCGA takes a sample of the cancerous tissue and a sample of the normal tissue for each patient. I would like to gather the Renal cancer patients of ICGC for example, and get the mean...

14 November 2021 211 1 View

How do I find the entire simple variant information per project (cancer type) on PCAWG?

Hey, I need WGS simple variation data for breast cancer patients for example. Can I find in the PCAWG a single file with the mutations of all the breast cancer patients? Additionaly, are these...

13 January 2021 5,187 0 View

Where can I get "whole organism" mRNA expression levels (of many organisms)?

Hey, I need to get the mRNA expression profile of multiple organisms, and I do not need it to be specific for a certain tissue or status, but rather the average values per organism. For example,...

10 December 2020 3,713 3 View

What is the best way to perform multiple sequence alignment on orthologs?

Hey, Let's say I have one gene, TP53 for example. What I want to do is- 1.Find the gene's orthologs. 2. Align them all. I downloaded the orthologs from ENSEMBL, they are stores in a single...

26 November 2020 5,886 3 View

What are the gene annotations for the TCGA "Variant Classification" feature?

Hi, in the TCGA database there is a feature ,"Variant Classification", which classifies each mutation to being in the 5'UTR, 3'UTR, intron, etc... I know they use the GRCh38 version of...

12 November 2019 2,218 1 View