Satnam Singh

10 Questions 7 Answers 0 Followers

Questions related from Satnam Singh

How do you process 3D dosy data in Dosy Toolbox?

Dear all,I did a 3D Dosy Cosy experiment on the BRUKER NMR Machine. I used the default pulse sequence. Now I have to process that data in the Dosy Toolbox or in topspin. But I do not know how to...

29 January 2015 2,249 0 View

Why is buffer added durinl Liposome preparation of DPPC instead of water?

I want to know that why the buffer is added during liposome preparation . Why ordinary water is not used instead of buffer.. Thanks in advance

07 September 2014 7,986 6 View

Can you help me with a problem when plotting the dosy data on dosy toolbox?

I am not getting a good plot. kindly help me. Thanks in advance . I am appending files.

14 July 2014 2,948 2 View

Can anyone help with 1d NMR data processing in topspin?

I want to ask one question related to data processing in Topspin. I done 10 1-d diffusion experiments. Now I have to find the area under one peak(in all spectra) and then I have to plot it. After...

02 May 2014 4,216 3 View

Can anyone help with diffusion tensor by gromacs?

I have to study diffusion by gromacs. I want to calculate full tensor of diffusion coefficients. I am using "g_msd -ten". But it is giving me only one value. I want to ask that my command is...

06 March 2014 7,135 3 View

How to create a .cgc file in VMD?

I have to create .cgc file for vitamin E in VMD. Kindly help me to create it. I need literature for it. Thanks in advance

09 December 2013 5,239 1 View

What is bead definition in VMD?

I am using coarse grained builder in VMD software. In residue based CG mapping, there is an option for bead definition. I am confused as to how to proceed and appreciate any suggestions. Thank you.

08 December 2013 9,167 1 View

Can anyone help with extracting a solvent or solute from a pdb file?

I have a pdb file. It is a mixture of alpha- tocopherol and a protein. I want to extract only the alpha-tocopherol. When I delete protein entries then there is a problem in the file. Please help...

01 December 2013 1,877 4 View

Related to conversion from all atom to martini coarse grained structure

I want co convert all atom to martini coarse grained structure of curcumin. I have all atom structure of curcumin kindly help me to convert it...I shall be thankful to you for this..

19 September 2013 4,220 3 View

DPPC+D2O simulation (problem related to gro file of surfactant(SDS))

I have to simulate DPPC+Water. For that I am using a surfactant SDS. I have downloaded .itp file of surfactants. But I need a gro file(coordinate file). How I get that file for SDS?

25 June 2013 5,674 3 View