Sabin Poudel

3 Questions 1 Answers 0 Followers

Questions related from Sabin Poudel

During Pan genome analysis of Campylobacter, is there any circumstance that can reduce the number of pangenome while addition of new strain?

Currently, I am analyzing the pangenome of campylobacter. While the addition of some of the strains the pan-genome also decreases along with the core genome. What might be the reason? I have...

17 March 2022 2,045 0 View

Which optimization is best while using PhyML phylogenic tree Topology/length/rate, Topology/length, length/rate, length, rate or none?

I am trying to build the phylogenic tree using PhyML in Genious Prime and its offers me the Substutin model for which I used TN93, branch support bootstrap and for the optimize it has several...

02 June 2021 9,274 2 View

How to construct MLST phylogenic tree?

I am trying to construct the MLST phylogenic tree for the Campylobacter jejuni but I am not sure how to alline all those seven genes for the construction of the phylogenic tree. Do I need to...

25 May 2021 254 1 View