Ruhshan Ahmed Abir

10 Questions 21 Answers 0 Followers

Questions related from Ruhshan Ahmed Abir

How do I get full structure of an antibody from its Fc and Fab fragment's PDB?

I'm interested about a monoclonal antibody Rituximab, I've found pdb structure of Fc and Fab regions of this. Is there any too/method that I can use to append these and get the full pdb structure?...

28 April 2018 1,694 3 View

How can I access Exonhunter gene prediction tool?

Does anyone know how to access or download exonhunter? I've found a URL from the research group's publication http://www.bioinformatics.uwaterloo.ca/downloads/exonhunter but this is seems not working.

15 January 2018 7,498 3 View

What is the state of the art in protein-protein interaction prediction?

I was studying about ppi prediction with machine learning approach, then the latest development I've found reported 97% accuracy with DVM hereAccurate prediction of protein-protein interactions by...

10 December 2017 4,923 4 View

How to create a protein model with snp?

My protein of interest has 3D structure available in pdb. I know about an snp that produces short isoform of that protein. How or using what tool I can produce that isoform as a pdb file?

07 April 2017 7,617 3 View

How to increase performance of neuralnet in R?

I was playing with different machine learning algorithms with some data of mine which are really messy. While other algorithms were not showing much promise , using neuralnet I've achieved some...

06 April 2017 1,064 2 View

How to identify Salmonella species with biochemical test?

Is it possible to presume about which Salomonella species present in the sample without using molecular tools like PCR? Just from biochemical tests? If I plan to do PCR for confirming species, how...

20 October 2016 6,730 2 View

Can you please provide me some good literature about NGS?

I'm looking for some good review articles covering details about NGS, NGS platforms, techniques used by manufactures like illumina, agilent or others. TIA.

11 June 2016 1,925 7 View

How to identify amino acid residues from autodock vina result?

I've performed docking with autodock vina, I can see the receptor ligand interaction using GUI of autodock tools but as I have quite a number of vina results, its getting tiresome every time doing...

30 January 2016 1,100 4 View

Is there any way to refine homology model?

I'm trying to build 3d model of protein with modeller, unfortunately I can find no template with good identity. So If I use that template anyway, can I use any tool to refine that model?

29 December 2015 9,148 9 View

Which genome editing method is better?

I looking for a brief resource about comparison between ZFN, TALEN, CRISPR/Cas system of genome editing. Actually I'm interested in their merits and demerits.

15 December 2014 8,939 4 View