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Questions related from Rucha Wadapurkar
I am creating Antigen map using Racmacs package in R. I have prepared a csv file of titre data and providing it as an input to system.file(): path_to_titer_file
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I am looking for explanation in the context of NGS variant calling pipeline
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From total number of ovarian cancer cell lines present, for how many cell lines, sequencing data is available?
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I have generated a lot of annotated cancer mutation data by NGS data analysis. What different kind of bioinformatics analysis can be carried out on that annotated mutation data to get some useful...
10 April 2020 1,549 0 View
Consurf server gives output in number of different ways. But I want result in following format, displayed in image? How to get this?
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I have used Swissmodel, MODELLER, Phyre, Robetta and I-TASSER for modelling my protein, but in the modelled structure, amino acid is not observed at a specific position to which I want to induce a...
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How to extract the gene symbols, names and unigene IDs from clariomdhumancdf annotation environment using R bioconductor package? I'm performing differential expression analysis of GEO datasets.
22 June 2019 562 3 View
I have created docked complex.pdbqt file using Autodock and I have uploaded that file in Pymol and visualized formed hydrogen bonds between ligand and protein, but the binding site residues of...
28 March 2019 1,825 11 View
Can anybody elaborate the energy concept of docked complex? and physics behind it?
19 March 2019 4,965 4 View
After running cufflink for two samples of RNA-Seq data, I used cuffmerge and executed the following command cuffmerge -o -g -s assemblies.txt Where assemblies.txt contains the...
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