Mohd Muzammil Khan

6 Questions 3 Answers 0 Followers

Questions related from Mohd Muzammil Khan

Errror in running python script ?

Hi! While running a script I am getting an error. C:\Users\Muzammil Khan\Desktop\count>python count.py Traceback (most recent call last): File "C:\Users\Muzammil Khan\Desktop\count\count.py",...

08 May 2023 5,749 3 View

What is the maximum number of sequences that can be used in ConSurf Server ?

Hey ! I have been looking for the limitations for consurf server. As I have a data file containing 95k sequences but the job in consurf is still processing from last 3 week. So I wanna know is...

21 July 2022 258 2 View

How can I remove badly aligned sequences from multiple sequence alignments?

Hi, I have installed trimAL in linux but I don't know how to execute it. I have 20, 000 sequence in which some are very badly aligned so I wont them to be remove.

06 January 2022 1,551 3 View

What is the difference between 𝚫𝚫G calculation by FoldX and DynaMut software ??

I have used both software for calculating the 𝚫𝚫G, although they both have different sine convention for defining protein stability/destability. For example what I have observed in my result is...

14 January 2021 3,105 1 View

How to visualise the steric clashes bEwteen the ligand and protein in PYMOL ?

I have modeled a protein along with ligand, now I have to check weather that protein pocket is taking up the ligand ?? should I use short distance method for my analysis ?? One more thing can...

04 February 2020 1,130 2 View

What is objective function in homology modelling?

Actually I am facing the problem in selecting the best model from the 10 models but In some paper it was given that the best model can be selected on the basis of dope score, whereas in Andrej...

13 December 2019 7,629 3 View